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Interactive Tools of European Galaxy Server

The Interactive Tools of European Galaxy Server can be reached here and is provided by University of Freiburg.

Short Facts

Service URL

https://live.usegalaxy.eu

Target group

Open for everyone

Login process

Login via OpenIDC (LS-AAI, DataPLANT)

Support

contact@usegalaxy.eu

Documentation

https://training.galaxyproject.org

Features

Interactive Tools of European Galaxy Server offers:

  • Version(s): Galaxy 23.0 (Jupyterlab v3+)

  • Temporarly install new packages by the user

  • Shared folder exists

  • Persistent storage

  • Cloud storage can be accessed via Galaxy

  • Notebooks can be combined with classical HPC workflows

  • Part of the EOSC project EuroScienceGateway

  • Community can contribute VREs

  • Available resources and apps can vary based on user affiliation

Programming Languages:

  • Python

  • Julia

  • R

  • Ansible

  • Bash

Environments:

  • Jupyter ML

  • MGnify

  • Jupyter for Material Science

  • Pangeo Jupyter

  • Climate Jupyter

  • bqplot

  • jupyter-matplotlib

  • jupyterlab-jupytext

  • jupyterlab-manager

  • fasta-extension

  • geojson-extension

  • katex-extension

  • jupyterlab_hdf

  • jupyterlab-execute-time

  • jupyterlab-kernelspy

  • jupyterlab-nvdashboard

  • jupyterlab-system-monitor

  • jupyterlab-topbar-extension

  • jupyterlab_pygments

  • nbdime-jupyterlab

  • collapsible_headings

  • code-snippet-extension

  • code-viewer-extension

  • metadata-extension

  • pipeline-editor-extension

  • python-editor-extension

  • r-editor-extension

  • scala-editor-extension

  • script-debugger-extension

  • theme-extension

  • jupyterlab-lsp

  • resource-usage

  • jupyter-server-proxy

  • git

  • jupyterlab-preview

  • RStudio

  • AskOMICS

  • BAM-iobio

  • VCF-iobio

  • BlobToolKit

  • CellXGene

  • Ethercalc

  • Phinch

  • MetaShARK

  • MetaShrimp

  • ODV

  • Wallace

  • iSEE

  • Wilson

  • Panoply netCDF Viewer

  • HiGlass

  • ParaView

  • QGIS

  • QuPath

  • Radiant

  • Scoop3-Agro

  • VRM Editor

  • Pavian

  • OpenRefine

  • Neo4J

  • GeoExplorer

  • NEAL

Resources

Interactive Tools of European Galaxy Server provides Jupyter servers within the following resource limits:

Resource Default Maximum
Number of Jupyter servers per user 1 1
Number of CPUs 1 4
CPU time 24 h 72 h
Amount of memory 4 GB 256 GB
Number of GPUs 1 1
Disk space 250 GB 2 TB
Persistent disk space 250 GB 250 GB